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Table 3 Structural parameters derived from experimental SAXS data and comparison to known parameters of mouse CNPase

From: Structural similarities and functional differences clarify evolutionary relationships between tRNA healing enzymes and the myelin enzyme CNPase

Protein

ScTrl1 PNK/CPDase

BfPNK/CPDase

ScTrl1 CPDase

MmCNPase [28]

MmCNPase catalytic domain [27]

D max (nm)

11.6

14.3

8.5

8.8

7.1

Guinier R g (nm)

3.37

4.16

2.48

2.6

2.13

Real-space R g (nm)

3.79

4.83

2.69

-

-

VP (nm3)

78.6

137.7

50.1

-

44.4

Ab initio V (nm3)/estimated MW of globular particle (kDa)

106/78.7

212/157.4

30.5/22.6

-

-

Monomeric MW (kDa)

52.7

60.3

32.2

42

24

smin/smax (nm−1) bead-based modeling

0.09-2.52

0.12-1.31

0.08-3.72

-

-

smin/smax (nm−1) chain-based modeling

0.09-5.0

0.12-2.8

0.08-3.72

-

-

Chi2

1.0 (DAMMIF), 0.7 (GASBOR), 1.3 (MONSA)

1.0 (DAMMIF), 1.0 (GASBOR)

0.6 (DAMMIF), 0.7 (GASBOR), 1.2 (MONSA)

-

-