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Table 2 Effect of protonation on the barriers of the sequential reaction [a]

From: Effects of protonation on the hydrolysis of triphosphate in vacuum and the implications for catalysis by nucleotide hydrolyzing enzymes

nP [b]

 

ΔE 1 ǂ [c]

E meta [d]

E 2 [e]

ΔE 2 ǂ [f]

0

 

14.2

11.2

45.9

34.7

1

α:

1.82

−7.07

30.4

37.5

1

β:

1.99

−36.0

−4.6

31.4

1

γ: [g]

---

---

---

---

2

αβ:

0.34

−38.2

−9.0

29.2

2

αγ:

14.5

13.9

40.9

27.0

2

βγ:

8.02

3.8

29.1

25.3

3

αβγ:

4.9

−3.27

18.6

21.9

  1. [a] Energy barriers (AM1/d, in kcal mol−1) along the sequential reaction for different protonation states. [b] nP is the number of protons on the triphosphate (α, β and γ indicate which phosphate is protonated). [c] ΔE 1 ǂ is the barrier of the metaphosphate formation, i.e., the energy difference between the saddle point for Pγ-Oβγ bond cleavage and the reactant. Note that ΔE 1 ǂ is the same as E 1 defined in the main text. [d] E meta is the energy of the geometry-optimised metaphosphate intermediate, relative to the initial reactant. [e] E 2 is the energy of the saddle point for Wa attack onto the metaphosphate, relative to the reactant. [f] ΔE 2 ǂ = (E 2 - E meta) is the activation barrier for water Wa attack onto the metaphosphate. [g] Various searches for a sequential reaction failed (hydrolysis always proceeded through a concurrent mechanism)